No. words: 1843; after pruning: 1791


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:280)  255  1.42 0.00 0.71  BM134437Ld09P067A04P067A101R1_026.ab1        1   282 (148)  C BM134437Ld09P067A04P067A101F1_010.ab1   (202)   280     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (2,1:286)  467  0.21 0.41 0.00  BM134437Ld09P067A04P067A101F1_010.ab1        1   482 (0)    BM134437Ld09P067A04P067A101F1_026.ab1        6   489 (0) *
Merge:(0)    0    0.0 8.5 (3,1:0)  409  1.40 0.00 0.00  BM134437Ld09P067A04P067A101R1_026.ab1        1   430 (0)    BM134437Ld09P067A04P067A101R1_010.ab1        1   430 (12) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  916 nodes

 275 str. conn. components

Path
    1  C BM134437Ld09P067A04P067A101F1_010.ab1   482 
   11  C BM134437Ld09P067A04P067A101F1_026.ab1   479 
  402    BM134437Ld09P067A04P067A101R1_010.ab1   200 
  406    BM134437Ld09P067A04P067A101R1_026.ab1   204 
  407  C BM134437Ld09P067A04P067A101F1_026.ab1    83 
  422    BM134437Ld09P067A04P067A101R1_010.ab1   220 
  434    BM134437Ld09P067A04P067A101R1_026.ab1   232 
  481    BM134437Ld09P067A04P067A101R1_010.ab1   279 
  485    BM134437Ld09P067A04P067A101R1_026.ab1   283 
  629    BM134437Ld09P067A04P067A101R1_010.ab1   427 
Contig length: old 644, new 644

Contig length: old 644, new 644
New start: 0