No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.0 (1,1:345)  327  0.00 0.29 0.29  BM134520Ld09P003A01P003A071F1_085.ab1        1   344 (144)  C BM134520Ld09P003A01P003A071R1_085.ab1   (169)   346     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C BM134520Ld09P003A01P003A071R1_085.ab1   515 
  199    BM134520Ld09P003A01P003A071F1_085.ab1    29 
  203  C BM134520Ld09P003A01P003A071R1_085.ab1   313 
  223    BM134520Ld09P003A01P003A071F1_085.ab1    53 
  235  C BM134520Ld09P003A01P003A071R1_085.ab1   281 
  307    BM134520Ld09P003A01P003A071F1_085.ab1   137 
  367  C BM134520Ld09P003A01P003A071R1_085.ab1   149 
  379    BM134520Ld09P003A01P003A071F1_085.ab1   209 
  439  C BM134520Ld09P003A01P003A071R1_085.ab1    77 
  455    BM134520Ld09P003A01P003A071F1_085.ab1   285 
Contig length: old 657, new 658

Contig length: old 658, new 658
New start: 0