No. words: 1745; after pruning: 1693


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:592)  585  0.00 0.00 0.00  BM134557Sn28P067F03P101G121F1_090.ab1        1   593 (42)  C BM134557Sn28P067F03P101G121R1_090.ab1   (51)   593     1 *
Merge:(0)    0    0.0 5.5 (2,1:0)  282  1.34 0.00 0.00  BM134557Sn28P067F03P101G121R1_090.ab1      296   593 (51)  C BM134557Sn28P067F03P101G121F1_092.ab1   (0)   298     1 *
Merge:(0)    0    0.0 1.9 (3,1:587)  110  7.23 1.81 0.60  BM134557Sn28P067F03P101G121R1_090.ab1        8   173 (471)    BM134557Sn28P067F03P101G121R1_092.ab1        1   168 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  702 nodes

 248 str. conn. components

Path
    1  C BM134557Sn28P067F03P101G121R1_090.ab1   644 
   63    BM134557Sn28P067F03P101G121F1_092.ab1    12 
   71  C BM134557Sn28P067F03P101G121R1_090.ab1   574 
  111    BM134557Sn28P067F03P101G121F1_090.ab1    60 
  115  C BM134557Sn28P067F03P101G121R1_090.ab1   530 
  120    BM134557Sn28P067F03P101G121F1_090.ab1    69 
  123  C BM134557Sn28P067F03P101G121R1_090.ab1   522 
  509    BM134557Sn28P067F03P101G121F1_090.ab1   458 
  513  C BM134557Sn28P067F03P101G121R1_090.ab1   132 
  551    BM134557Sn28P067F03P101G121F1_090.ab1   500 
  555  C BM134557Sn28P067F03P101G121R1_090.ab1    90 
  563    BM134557Sn28P067F03P101G121F1_090.ab1   512 
  567  C BM134557Sn28P067F03P101G121R1_090.ab1    78 
  579    BM134557Sn28P067F03P101G121F1_090.ab1   528 
  580  C BM134557Sn28P067F03P101G121R1_090.ab1    65 
  599    BM134557Sn28P067F03P101G121F1_090.ab1   548 
  603  C BM134557Sn28P067F03P101G121R1_090.ab1    42 
  619    BM134557Sn28P067F03P101G121F1_090.ab1   568 
  623  C BM134557Sn28P067F03P101G121R1_090.ab1    22 
  626  C BM134557Sn28P067F03P101G121R1_092.ab1    12 
  634  C BM134557Sn28P067F03P101G121R1_090.ab1    11 
  635    BM134557Sn28P067F03P101G121F1_090.ab1   584 
Contig length: old 686, new 686

Contig length: old 686, new 686
New start: 0