No. words: 1789; after pruning: 1763


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.3 (1,1:964)  818  0.00 0.00 0.00  BM138163Ld04P027H05P027H111F1_084.ab1       84   907 (0)  C BM138163Ld04P027H05P027H111R1_084.ab1   (0)   882    59 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  414 nodes

 209 str. conn. components

Path
    1    BM138163Ld04P027H05P027H111F1_084.ab1     1 
  391  C BM138163Ld04P027H05P027H111R1_084.ab1   575 
  487    BM138163Ld04P027H05P027H111F1_084.ab1   487 
  635  C BM138163Ld04P027H05P027H111R1_084.ab1   331 
  655    BM138163Ld04P027H05P027H111F1_084.ab1   655 
  663  C BM138163Ld04P027H05P027H111R1_084.ab1   303 
  675    BM138163Ld04P027H05P027H111F1_084.ab1   675 
  679  C BM138163Ld04P027H05P027H111R1_084.ab1   287 
Contig length: old 965, new 965

Contig length: old 965, new 965
New start: 0