No. words: 1360; after pruning: 1334


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.8 -2.8 (1,1:1099)  134 15.00 0.00 0.00  BQ160340As02P081F04P081F101F1_060.ab1      362   621 (0)  C BQ160340As02P081F04P081F101R1_060.ab1   (0)   739   480 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    BQ160340As02P081F04P081F101F1_060.ab1     1 
  392  C BQ160340As02P081F04P081F101R1_060.ab1   709 
  414    BQ160340As02P081F04P081F101F1_060.ab1   414 
  422  C BQ160340As02P081F04P081F101R1_060.ab1   679 
  512    BQ160340As02P081F04P081F101F1_060.ab1   512 
  516  C BQ160340As02P081F04P081F101R1_060.ab1   585 
Contig length: old 1100, new 1100

Contig length: old 1100, new 1100
New start: 0 
S Change at: 380; seg lengths: entry 1, contig 1
S Change at: 400; seg lengths: entry 1, contig 1
S Change at: 439; seg lengths: entry 2, contig 2
S Change at: 444; seg lengths: entry 1, contig 1
S Change at: 483; seg lengths: entry 1, contig 1
S Change at: 493; seg lengths: entry 1, contig 1
S Change at: 528; seg lengths: entry 1, contig 1
S Change at: 561; seg lengths: entry 1, contig 1
S Change at: 566; seg lengths: entry 8, contig 8