No. words: 1677; after pruning: 1637


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0    0.0 1.4 (1,1:1610)   55  0.00 0.00 0.00  BQ160340At02P081F04P081F101F1_056.ab1      784   849 (0)  C BQ160340At02P081F04P081F101R1_056.ab1   (0)   828   763 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  34 nodes

 19 str. conn. components

Path
    1    BQ160340At02P081F04P081F101F1_056.ab1     1 
  787  C BQ160340At02P081F04P081F101R1_056.ab1   825 
  795    BQ160340At02P081F04P081F101F1_056.ab1   795 
  799  C BQ160340At02P081F04P081F101R1_056.ab1   813 
  807    BQ160340At02P081F04P081F101F1_056.ab1   807 
  811  C BQ160340At02P081F04P081F101R1_056.ab1   801 
  831    BQ160340At02P081F04P081F101F1_056.ab1   831 
  839  C BQ160340At02P081F04P081F101R1_056.ab1   773 
Contig length: old 1611, new 1611

Contig length: old 1611, new 1611
New start: 0 
S Change at: 760; seg lengths: entry 1, contig 1