No. words: 1409; after pruning: 1383


Histogram of relative pair offsets, for read pairs with multiple alignments:
46     4
92     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:539)  514  0.00 0.19 0.00  BQ167580Ld03P081B05P081B111F1_035.ab1        1   540 (178)  C BQ167580Ld03P081B05P081B111R1_035.ab1   (150)   541     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C BQ167580Ld03P081B05P081B111R1_035.ab1   691 
  279    BQ167580Ld03P081B05P081B111F1_035.ab1   128 
  299  C BQ167580Ld03P081B05P081B111R1_035.ab1   393 
  347    BQ167580Ld03P081B05P081B111F1_035.ab1   196 
  467  C BQ167580Ld03P081B05P081B111R1_035.ab1   225 
  487    BQ167580Ld03P081B05P081B111F1_035.ab1   336 
Contig length: old 869, new 869

Contig length: old 869, new 869
New start: 0