No. words: 800; after pruning: 774


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.2 -2.2 (1,1:307)  198 10.36 0.00 0.97  CD452526As01P081D06P081D121F2_087.ab1        1   309 (128)  C CD452526As01P081D06P081D121R2_087.ab1   (57)   306     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1  C CD452526As01P081D06P081D121R2_087.ab1   363 
   61    CD452526As01P081D06P081D121F2_087.ab1     4 
   90  C CD452526As01P081D06P081D121R2_087.ab1   275 
   94    CD452526As01P081D06P081D121F2_087.ab1    37 
  118  C CD452526As01P081D06P081D121R2_087.ab1   247 
  161    CD452526As01P081D06P081D121F2_087.ab1   104 
  165  C CD452526As01P081D06P081D121R2_087.ab1   200 
  169    CD452526As01P081D06P081D121F2_087.ab1   112 
  187  C CD452526As01P081D06P081D121R2_087.ab1   178 
  191    CD452526As01P081D06P081D121F2_087.ab1   134 
  204  C CD452526As01P081D06P081D121R2_087.ab1   161 
  208    CD452526As01P081D06P081D121F2_087.ab1   151 
Contig length: old 492, new 494

Contig length: old 494, new 494
New start: 0 
D Change at: 76; seg lengths: entry 2, contig 3
S Change at: 132; seg lengths: entry 6, contig 6
S Change at: 238; seg lengths: entry 1, contig 1
S Change at: 264; seg lengths: entry 1, contig 1
S Change at: 281; seg lengths: entry 1, contig 1
S Change at: 315; seg lengths: entry 1, contig 1
I Change at: 332; seg lengths: entry 1, contig 0