No. words: 590; after pruning: 564


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    0   -5.5 -5.5 (1,1:106)   72 10.28 0.00 0.00  CD454173At01P115G12P115H121F1_067.ab1        1   107 (195)  C CD454173At01P115G12P115H121R1_067.ab1   (181)   107     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.7 (<20 part: -7.7 (#=11), >20:0.0 (#=0); in HQ: -7.7, out HQ 0.0), match: 2.1  total: -5.6   72 10.28 0.00 0.00  CD454173At01P115G12P115H121F1_067.ab1        1   107 (195)  C CD454173At01P115G12P115H121R1_067.ab1   (181)   107     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.5       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    CD454173At01P115G12P115H121R1_067.ab1     1 
Contig length: old 288, new 288

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    CD454173At01P115G12P115H121F1_067.ab1     1 
Contig length: old 302, new 302