No. words: 1382; after pruning: 1356


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:530)  504  0.00 0.00 0.38  CD454852Ld09P081H06P081H121F1_004.ab1        1   531 (148)  C CD454852Ld09P081H06P081H121R1_004.ab1   (174)   529     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C CD454852Ld09P081H06P081H121R1_004.ab1   703 
  552    CD454852Ld09P081H06P081H121F1_004.ab1   379 
  560  C CD454852Ld09P081H06P081H121R1_004.ab1   144 
  600    CD454852Ld09P081H06P081H121F1_004.ab1   427 
Contig length: old 851, new 852

Contig length: old 852, new 852
New start: 0