No. words: 1243; after pruning: 1217


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:467)  463  0.00 0.21 0.00  (UMN173F)_C02_BE399515Ld11P166C01P166C041F1_012.ab1        1   468 (163)  C (UMN173R)_C02_BE399515Ld11P166C01P166C041R1_012.ab1   (143)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C (UMN173R)_C02_BE399515Ld11P166C01P166C041R1_012.ab1   612 
  249    (UMN173F)_C02_BE399515Ld11P166C01P166C041F1_012.ab1   105 
  405  C (UMN173R)_C02_BE399515Ld11P166C01P166C041R1_012.ab1   208 
  525    (UMN173F)_C02_BE399515Ld11P166C01P166C041F1_012.ab1   381 
  529  C (UMN173R)_C02_BE399515Ld11P166C01P166C041R1_012.ab1    84 
  545    (UMN173F)_C02_BE399515Ld11P166C01P166C041F1_012.ab1   401 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0