No. words: 1042; after pruning: 1016


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:809)  207  2.59 0.00 0.00  (UMN171F)_A02_BE403509As01P166D01P166D041F1_016.ab1       12   243 (0)  C (UMN171R)_A02_BE403509As01P166D01P166D041R1_016.ab1   (0)   799   568 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1    (UMN171F)_A02_BE403509As01P166D01P166D041F1_016.ab1     1 
   20  C (UMN171R)_A02_BE403509As01P166D01P166D041R1_016.ab1   791 
   36    (UMN171F)_A02_BE403509As01P166D01P166D041F1_016.ab1    36 
   40  C (UMN171R)_A02_BE403509As01P166D01P166D041R1_016.ab1   771 
   86    (UMN171F)_A02_BE403509As01P166D01P166D041F1_016.ab1    86 
   90  C (UMN171R)_A02_BE403509As01P166D01P166D041R1_016.ab1   721 
  110    (UMN171F)_A02_BE403509As01P166D01P166D041F1_016.ab1   110 
  118  C (UMN171R)_A02_BE403509As01P166D01P166D041R1_016.ab1   693 
Contig length: old 810, new 810

Contig length: old 810, new 810
New start: 0