No. words: 1580; after pruning: 1554


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:886)  607  1.97 0.15 0.00  (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1        1   659 (0)  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   (34)   887   228 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   921 
   45    (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1    11 
   57  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   865 
   82    (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1    47 
  102  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   820 
  118    (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1    83 
  174  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   748 
  193    (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1   158 
  209  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   713 
  213    (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1   178 
  229  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   693 
  233    (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1   198 
  241  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   681 
  245    (UMN171F)_B02_BE403509As02P166D01P166D041F1_014.ab1   210 
  249  C (UMN171R)_B02_BE403509As02P166D01P166D041R1_014.ab1   673 
Contig length: old 921, new 921

Contig length: old 921, new 921
New start: 0