No. words: 1711; after pruning: 1685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:887)  761  0.76 0.13 0.00  (UMN171F)_D02_BE403509At02P166D01P166D041F1_010.ab1        1   785 (0)  C (UMN171R)_D02_BE403509At02P166D01P166D041R1_010.ab1   (37)   889   104 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C (UMN171R)_D02_BE403509At02P166D01P166D041R1_010.ab1   926 
   50    (UMN171F)_D02_BE403509At02P166D01P166D041F1_010.ab1    12 
   62  C (UMN171R)_D02_BE403509At02P166D01P166D041R1_010.ab1   865 
   80    (UMN171F)_D02_BE403509At02P166D01P166D041F1_010.ab1    42 
  108  C (UMN171R)_D02_BE403509At02P166D01P166D041R1_010.ab1   819 
  120    (UMN171F)_D02_BE403509At02P166D01P166D041F1_010.ab1    82 
  188  C (UMN171R)_D02_BE403509At02P166D01P166D041R1_010.ab1   739 
  192    (UMN171F)_D02_BE403509At02P166D01P166D041F1_010.ab1   154 
  364  C (UMN171R)_D02_BE403509At02P166D01P166D041R1_010.ab1   563 
  380    (UMN171F)_D02_BE403509At02P166D01P166D041F1_010.ab1   342 
  408  C (UMN171R)_D02_BE403509At02P166D01P166D041R1_010.ab1   519 
Contig length: old 926, new 926

Contig length: old 926, new 926
New start: 0