No. words: 1609; after pruning: 1583


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 15.1 (1,1:888)  705  0.42 0.00 0.00  (UMN171F)_G01_BE403509Tu01P166D01P166D041F1_003.ab1       39   756 (0)  C (UMN171R)_G01_BE403509Tu01P166D01P166D041R1_003.ab1   (2)   851   134 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1    (UMN171F)_G01_BE403509Tu01P166D01P166D041F1_003.ab1     1 
   42  C (UMN171R)_G01_BE403509Tu01P166D01P166D041R1_003.ab1   848 
   46    (UMN171F)_G01_BE403509Tu01P166D01P166D041F1_003.ab1    46 
   70  C (UMN171R)_G01_BE403509Tu01P166D01P166D041R1_003.ab1   820 
   87    (UMN171F)_G01_BE403509Tu01P166D01P166D041F1_003.ab1    87 
  147  C (UMN171R)_G01_BE403509Tu01P166D01P166D041R1_003.ab1   743 
  159    (UMN171F)_G01_BE403509Tu01P166D01P166D041F1_003.ab1   159 
  299  C (UMN171R)_G01_BE403509Tu01P166D01P166D041R1_003.ab1   591 
Contig length: old 889, new 889

Contig length: old 889, new 889
New start: 0