No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:481)  458  0.21 0.62 0.21  (UMN171F)_E03_BE443276As01P166D03P166D061F1_023.ab1        1   482 (48)  C (UMN171R)_E03_BE443276As01P166D03P166D061R1_023.ab1   (41)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C (UMN171R)_E03_BE443276As01P166D03P166D061R1_023.ab1   525 
  115    (UMN171F)_E03_BE443276As01P166D03P166D061F1_023.ab1    71 
  119  C (UMN171R)_E03_BE443276As01P166D03P166D061R1_023.ab1   407 
  151    (UMN171F)_E03_BE443276As01P166D03P166D061F1_023.ab1   107 
  335  C (UMN171R)_E03_BE443276As01P166D03P166D061R1_023.ab1   191 
  347    (UMN171F)_E03_BE443276As01P166D03P166D061F1_023.ab1   303 
Contig length: old 573, new 574

Contig length: old 574, new 574
New start: 0