No. words: 1315; after pruning: 1289


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.3 (1,1:502)  477  0.60 0.40 0.00  (UMN172F)_B09_BE443276Ld12P166D03P166D061F1_077.ab1        3   500 (170)  C (UMN172R)_B09_BE443276Ld12P166D03P166D061R1_077.ab1   (143)   502     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C (UMN172R)_B09_BE443276Ld12P166D03P166D061R1_077.ab1   645 
  276    (UMN172F)_B09_BE443276Ld12P166D03P166D061F1_077.ab1   133 
Contig length: old 812, new 813

Contig length: old 813, new 813
New start: 0