No. words: 1175; after pruning: 1149


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:543)  544  0.00 0.00 0.00  (UMN171F)_D04_BE443349As02P166E03P166E061F1_026.ab1        1   544 (46)  C (UMN171R)_D04_BE443349As02P166E03P166E061R1_026.ab1   (41)   544     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C (UMN171R)_D04_BE443349As02P166E03P166E061R1_026.ab1   585 
  405    (UMN171F)_D04_BE443349As02P166E03P166E061F1_026.ab1   364 
Contig length: old 631, new 631

Contig length: old 631, new 631
New start: 0