No. words: 1359; after pruning: 1319


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -1.0 -1.0 (1,1:454)  317  9.07 0.66 0.00  (UMN172F)_B11_BE443349Ld06P166E03P166E061F1_093.ab1        1   452 (314)  C (UMN172R)_B11_BE443349Ld06P166E03P166E061R1_093.ab1   (137)   456     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C (UMN172R)_B11_BE443349Ld06P166E03P166E061R1_093.ab1   593 
  141    (UMN172F)_B11_BE443349Ld06P166E03P166E061F1_093.ab1     4 
Contig length: old 904, new 903

Contig length: old 903, new 905
New start: 0 
I Change at: 148; seg lengths: entry 3, contig 2
I Change at: 184; seg lengths: entry 7, contig 6
S Change at: 227; seg lengths: entry 1, contig 1
S Change at: 861; seg lengths: entry 1, contig 1