No. words: 1425; after pruning: 1399


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 10.0 (1,1:562)  541  0.54 0.18 0.00  (UMN172F)_F11_BE443349Ld10P166E03P166E061F1_085.ab1        1   555 (171)  C (UMN172R)_F11_BE443349Ld10P166E03P166E061R1_085.ab1   (135)   564     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C (UMN172R)_F11_BE443349Ld10P166E03P166E061R1_085.ab1   699 
  570    (UMN172F)_F11_BE443349Ld10P166E03P166E061F1_085.ab1   434 
  574  C (UMN172R)_F11_BE443349Ld10P166E03P166E061R1_085.ab1   126 
  622    (UMN172F)_F11_BE443349Ld10P166E03P166E061F1_085.ab1   486 
  634  C (UMN172R)_F11_BE443349Ld10P166E03P166E061R1_085.ab1    66 
  638    (UMN172F)_F11_BE443349Ld10P166E03P166E061F1_085.ab1   502 
  650  C (UMN172R)_F11_BE443349Ld10P166E03P166E061R1_085.ab1    50 
  658    (UMN172F)_F11_BE443349Ld10P166E03P166E061F1_085.ab1   522 
  662  C (UMN172R)_F11_BE443349Ld10P166E03P166E061R1_085.ab1    38 
  670    (UMN172F)_F11_BE443349Ld10P166E03P166E061F1_085.ab1   534 
Contig length: old 862, new 862

Contig length: old 862, new 862
New start: 0