No. words: 1399; after pruning: 1373


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:537)  521  0.74 0.19 0.00  (UMN172F)_B12_BE443349Ld13P166E03P166E061F1_094.ab1        1   537 (175)  C (UMN172R)_B12_BE443349Ld13P166E03P166E061R1_094.ab1   (149)   538     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C (UMN172R)_B12_BE443349Ld13P166E03P166E061R1_094.ab1   687 
  299    (UMN172F)_B12_BE443349Ld13P166E03P166E061F1_094.ab1   149 
  339  C (UMN172R)_B12_BE443349Ld13P166E03P166E061R1_094.ab1   349 
  359    (UMN172F)_B12_BE443349Ld13P166E03P166E061F1_094.ab1   209 
  419  C (UMN172R)_B12_BE443349Ld13P166E03P166E061R1_094.ab1   269 
  611    (UMN172F)_B12_BE443349Ld13P166E03P166E061F1_094.ab1   461 
  651  C (UMN172R)_B12_BE443349Ld13P166E03P166E061R1_094.ab1    37 
  659    (UMN172F)_B12_BE443349Ld13P166E03P166E061F1_094.ab1   509 
Contig length: old 861, new 862

Contig length: old 862, new 862
New start: 0