No. words: 1627; after pruning: 1601


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:976)  636  0.00 0.00 0.00  (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1      206   855 (0)  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   (0)   772   123 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1    (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1     1 
  517  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   461 
  529    (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1   529 
  541  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   437 
  545    (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1   545 
  573  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   405 
  581    (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1   581 
  585  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   393 
  593    (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1   593 
  597  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   381 
  617    (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1   617 
  633  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   345 
  765    (UMN172F)_F09_BE443995Ld01P166G03P166H061F1_069.ab1   765 
  769  C (UMN172R)_F09_BE443995Ld01P166G03P166H061R1_069.ab1   209 
Contig length: old 977, new 977

Contig length: old 977, new 977
New start: 0