No. words: 1260; after pruning: 1234


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.2 (1,1:474)  427  2.32 0.00 0.21  (UMN173F)_G02_BE445496Ld01P176A01P176A041F1_004.ab1        2   475 (174)  C (UMN173R)_G02_BE445496Ld01P176A01P176A041R1_004.ab1   (138)   473     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C (UMN173R)_G02_BE445496Ld01P176A01P176A041R1_004.ab1   611 
  207    (UMN173F)_G02_BE445496Ld01P176A01P176A041F1_004.ab1    70 
  219  C (UMN173R)_G02_BE445496Ld01P176A01P176A041R1_004.ab1   393 
  243    (UMN173F)_G02_BE445496Ld01P176A01P176A041F1_004.ab1   106 
  251  C (UMN173R)_G02_BE445496Ld01P176A01P176A041R1_004.ab1   361 
  291    (UMN173F)_G02_BE445496Ld01P176A01P176A041F1_004.ab1   154 
Contig length: old 785, new 786

Contig length: old 786, new 786
New start: 0