No. words: 1252; after pruning: 1226


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:462)  455  0.00 0.00 0.00  (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1        1   463 (178)  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   (148)   463     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   611 
  213    (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1    65 
  221  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   391 
  245    (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1    97 
  249  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   363 
  261    (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1   113 
  269  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   343 
  301    (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1   153 
  317  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   295 
  325    (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1   177 
  377  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   235 
  421    (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1   273 
  437  C (UMN173R)_A03_BE445496Ld03P176A01P176A041R1_031.ab1   175 
  477    (UMN173F)_A03_BE445496Ld03P176A01P176A041F1_031.ab1   329 
Contig length: old 789, new 789

Contig length: old 789, new 789
New start: 0