No. words: 1464; after pruning: 1438


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.5 (1,1:701)  667  0.86 0.14 0.14  (UMN172F)_D01_BE489274As02P176C01P176D041F1_009.ab1        1   697 (37)  C (UMN172R)_D01_BE489274As02P176C01P176D041R1_009.ab1   (28)   702     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C (UMN172R)_D01_BE489274As02P176C01P176D041R1_009.ab1   730 
  566    (UMN172F)_D01_BE489274As02P176C01P176D041F1_009.ab1   537 
  590  C (UMN172R)_D01_BE489274As02P176C01P176D041R1_009.ab1   141 
  622    (UMN172F)_D01_BE489274As02P176C01P176D041F1_009.ab1   593 
  634  C (UMN172R)_D01_BE489274As02P176C01P176D041R1_009.ab1    97 
  638    (UMN172F)_D01_BE489274As02P176C01P176D041F1_009.ab1   609 
  692  C (UMN172R)_D01_BE489274As02P176C01P176D041R1_009.ab1    39 
  700    (UMN172F)_D01_BE489274As02P176C01P176D041F1_009.ab1   671 
Contig length: old 762, new 763

Contig length: old 763, new 763
New start: 0