No. words: 1323; after pruning: 1297 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 12.7 (1,1:622) 599 0.16 0.32 0.00 (UMN172F)_C02_BE490700At01P176G01P176G041F1_012.ab1 1 622 (39) C (UMN172R)_C02_BE490700At01P176G01P176G041R1_012.ab1 (38) 624 1 * Pass: 3 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 0 1 0 Offset 0 1 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 2 1 Chimera merges: Contig 1: 306 nodes 155 str. conn. components Path 1 C (UMN172R)_C02_BE490700At01P176G01P176G041R1_012.ab1 662 170 (UMN172F)_C02_BE490700At01P176G01P176G041F1_012.ab1 130 198 C (UMN172R)_C02_BE490700At01P176G01P176G041R1_012.ab1 465 442 (UMN172F)_C02_BE490700At01P176G01P176G041F1_012.ab1 402 454 C (UMN172R)_C02_BE490700At01P176G01P176G041R1_012.ab1 209 474 (UMN172F)_C02_BE490700At01P176G01P176G041F1_012.ab1 434 586 C (UMN172R)_C02_BE490700At01P176G01P176G041R1_012.ab1 77 590 (UMN172F)_C02_BE490700At01P176G01P176G041F1_012.ab1 550 602 C (UMN172R)_C02_BE490700At01P176G01P176G041R1_012.ab1 61 606 (UMN172F)_C02_BE490700At01P176G01P176G041F1_012.ab1 566 618 C (UMN172R)_C02_BE490700At01P176G01P176G041R1_012.ab1 45 630 (UMN172F)_C02_BE490700At01P176G01P176G041F1_012.ab1 590 Contig length: old 700, new 701 Contig length: old 701, new 701 New start: 0