No. words: 1521; after pruning: 1495


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:608)  589  0.00 0.33 0.00  (UMN173F)_D04_BE490700Ld05P176G01P176G041F1_026.ab1        1   608 (140)  C (UMN173R)_D04_BE490700Ld05P176G01P176G041R1_026.ab1   (163)   610     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C (UMN173R)_D04_BE490700Ld05P176G01P176G041R1_026.ab1   773 
  346    (UMN173F)_D04_BE490700Ld05P176G01P176G041F1_026.ab1   181 
  362  C (UMN173R)_D04_BE490700Ld05P176G01P176G041R1_026.ab1   412 
  410    (UMN173F)_D04_BE490700Ld05P176G01P176G041F1_026.ab1   245 
  482  C (UMN173R)_D04_BE490700Ld05P176G01P176G041R1_026.ab1   292 
  506    (UMN173F)_D04_BE490700Ld05P176G01P176G041F1_026.ab1   341 
  574  C (UMN173R)_D04_BE490700Ld05P176G01P176G041R1_026.ab1   200 
  638    (UMN173F)_D04_BE490700Ld05P176G01P176G041F1_026.ab1   473 
  654  C (UMN173R)_D04_BE490700Ld05P176G01P176G041R1_026.ab1   120 
  682    (UMN173F)_D04_BE490700Ld05P176G01P176G041F1_026.ab1   517 
Contig length: old 912, new 913

Contig length: old 913, new 913
New start: 0