No. words: 1530; after pruning: 1504


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:609)  595  0.00 0.16 0.00  (UMN173F)_A05_BE490700Ld10P176G01P176G041F1_047.ab1        1   610 (143)  C (UMN173R)_A05_BE490700Ld10P176G01P176G041R1_047.ab1   (166)   611     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C (UMN173R)_A05_BE490700Ld10P176G01P176G041R1_047.ab1   777 
  262    (UMN173F)_A05_BE490700Ld10P176G01P176G041F1_047.ab1    95 
  314  C (UMN173R)_A05_BE490700Ld10P176G01P176G041R1_047.ab1   464 
  350    (UMN173F)_A05_BE490700Ld10P176G01P176G041F1_047.ab1   183 
  366  C (UMN173R)_A05_BE490700Ld10P176G01P176G041R1_047.ab1   412 
  406    (UMN173F)_A05_BE490700Ld10P176G01P176G041F1_047.ab1   239 
  546  C (UMN173R)_A05_BE490700Ld10P176G01P176G041R1_047.ab1   232 
  606    (UMN173F)_A05_BE490700Ld10P176G01P176G041F1_047.ab1   439 
  658  C (UMN173R)_A05_BE490700Ld10P176G01P176G041R1_047.ab1   120 
  694    (UMN173F)_A05_BE490700Ld10P176G01P176G041F1_047.ab1   527 
Contig length: old 920, new 920

Contig length: old 920, new 920
New start: 0