No. words: 1513; after pruning: 1487


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:599)  578  0.17 0.33 0.00  (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1        1   599 (147)  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   (166)   601     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   767 
  262    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1    94 
  322  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   446 
  346    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1   178 
  362  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   406 
  382    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1   214 
  458  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   310 
  506    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1   338 
  542  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   226 
  578    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1   410 
  618  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   150 
  638    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1   470 
  646  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1   122 
  678    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1   510 
  710  C (UMN173R)_C05_BE490700Ld12P176G01P176G041R1_043.ab1    58 
  714    (UMN173F)_C05_BE490700Ld12P176G01P176G041F1_043.ab1   546 
Contig length: old 913, new 914

Contig length: old 914, new 914
New start: 0