No. words: 1631; after pruning: 1605


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.3 (1,1:666)  635  0.75 0.15 0.15  (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1        1   665 (127)  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   (172)   667     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   839 
  195    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1    22 
  203  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   637 
  247    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1    74 
  251  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   589 
  263    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1    90 
  279  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   561 
  319    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1   146 
  367  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   473 
  379    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1   206 
  411  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   429 
  419    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1   246 
  479  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   361 
  515    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1   342 
  595  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   245 
  611    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1   438 
  667  C (UMN173R)_D07_BE497784Ld09P176C02P176D051R1_057.ab1   173 
  691    (UMN173F)_D07_BE497784Ld09P176C02P176D051F1_057.ab1   518 
Contig length: old 964, new 965

Contig length: old 965, new 965
New start: 0