No. words: 1604; after pruning: 1578


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:968)  627  0.00 0.00 0.00  (UMN173F)_B11_BE500863Ld06P176D03P176E061F1_093.ab1      162   796 (0)  C (UMN173R)_B11_BE500863Ld06P176D03P176E061R1_093.ab1   (0)   808   174 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1    (UMN173F)_B11_BE500863Ld06P176D03P176E061F1_093.ab1     1 
  389  C (UMN173R)_B11_BE500863Ld06P176D03P176E061R1_093.ab1   581 
  409    (UMN173F)_B11_BE500863Ld06P176D03P176E061F1_093.ab1   409 
  417  C (UMN173R)_B11_BE500863Ld06P176D03P176E061R1_093.ab1   553 
  481    (UMN173F)_B11_BE500863Ld06P176D03P176E061F1_093.ab1   481 
  489  C (UMN173R)_B11_BE500863Ld06P176D03P176E061R1_093.ab1   481 
  501    (UMN173F)_B11_BE500863Ld06P176D03P176E061F1_093.ab1   501 
  505  C (UMN173R)_B11_BE500863Ld06P176D03P176E061R1_093.ab1   465 
  585    (UMN173F)_B11_BE500863Ld06P176D03P176E061F1_093.ab1   585 
  589  C (UMN173R)_B11_BE500863Ld06P176D03P176E061R1_093.ab1   381 
Contig length: old 969, new 969

Contig length: old 969, new 969
New start: 0