No. words: 1660; after pruning: 1634


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.4 (1,1:1504)  152  0.00 0.00 0.00  (UMN169F)_D10_BQ168706Ld17P081E05P081E111F1_074.ab1      644   798 (0)  C (UMN169R)_D10_BQ168706Ld17P081E05P081E111R1_074.ab1   (0)   862   708 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    (UMN169F)_D10_BQ168706Ld17P081E05P081E111F1_074.ab1     1 
  691  C (UMN169R)_D10_BQ168706Ld17P081E05P081E111R1_074.ab1   815 
Contig length: old 1505, new 1505

Contig length: old 1505, new 1505
New start: 0