No. words: 1233; after pruning: 1207


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.9 (1,1:1190)   39  0.00 0.00 0.00  USDA013F_G05_BE403631Ld01P032A05P032A11F1_035.ab1      375   416 (0)  C USDA013R_G05_BE403631Ld01P032A05P032A11R1_035.ab1   (0)   817   776 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  22 nodes

 13 str. conn. components

Path
    1    USDA013F_G05_BE403631Ld01P032A05P032A11F1_035.ab1     1 
  378  C USDA013R_G05_BE403631Ld01P032A05P032A11R1_035.ab1   814 
  382    USDA013F_G05_BE403631Ld01P032A05P032A11F1_035.ab1   382 
  390  C USDA013R_G05_BE403631Ld01P032A05P032A11R1_035.ab1   802 
  394    USDA013F_G05_BE403631Ld01P032A05P032A11F1_035.ab1   394 
  398  C USDA013R_G05_BE403631Ld01P032A05P032A11R1_035.ab1   794 
  406    USDA013F_G05_BE403631Ld01P032A05P032A11F1_035.ab1   406 
  410  C USDA013R_G05_BE403631Ld01P032A05P032A11R1_035.ab1   782 
Contig length: old 1191, new 1191

Contig length: old 1191, new 1191
New start: 0