No. words: 932; after pruning: 906


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.9 (1,1:329)  327  0.00 0.00 0.00  USDA003F_H09_BE403644Ld02P004H04H10F1_076.ab1        3   330 (159)  C USDA003R_H09_BE403644Ld02P004H04H10R1_076.ab1   (115)   328     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C USDA003R_H09_BE403644Ld02P004H04H10R1_076.ab1   443 
  207    USDA003F_H09_BE403644Ld02P004H04H10F1_076.ab1    94 
  211  C USDA003R_H09_BE403644Ld02P004H04H10R1_076.ab1   233 
  243    USDA003F_H09_BE403644Ld02P004H04H10F1_076.ab1   130 
  247  C USDA003R_H09_BE403644Ld02P004H04H10R1_076.ab1   197 
  251    USDA003F_H09_BE403644Ld02P004H04H10F1_076.ab1   138 
  255  C USDA003R_H09_BE403644Ld02P004H04H10R1_076.ab1   189 
  259    USDA003F_H09_BE403644Ld02P004H04H10F1_076.ab1   146 
  267  C USDA003R_H09_BE403644Ld02P004H04H10R1_076.ab1   177 
  275    USDA003F_H09_BE403644Ld02P004H04H10F1_076.ab1   162 
  303  C USDA003R_H09_BE403644Ld02P004H04H10R1_076.ab1   141 
  307    USDA003F_H09_BE403644Ld02P004H04H10F1_076.ab1   194 
Contig length: old 602, new 602

Contig length: old 602, new 602
New start: 0