No. words: 1152; after pruning: 1126


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:429)  406  0.23 0.00 0.23  USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1        1   430 (148)  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   (145)   429     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   574 
  242    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1    98 
  246  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   329 
  290    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   146 
  302  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   273 
  306    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   162 
  310  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   265 
  322    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   178 
  326  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   249 
  334    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   190 
  342  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   233 
  403    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   259 
  435  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   140 
  439    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   295 
  459  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1   116 
  471    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   327 
  555  C USDA003R_F06_BE405749Ld08P004G03G09R1_047.ab1    20 
  559    USDA003F_F06_BE405749Ld08P004G03G09F1_047.ab1   415 
Contig length: old 722, new 722

Contig length: old 722, new 722
New start: 0