No. words: 1043; after pruning: 1017


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:384)  374  0.00 0.00 0.26  USDA003F_B04_BE425354Ld04P004F04F10F1_029.ab1        1   385 (146)  C USDA003R_B04_BE425354Ld04P004F04F10R1_029.ab1   (128)   384     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA003R_B04_BE425354Ld04P004F04F10R1_029.ab1   512 
  280    USDA003F_B04_BE425354Ld04P004F04F10F1_029.ab1   152 
  292  C USDA003R_B04_BE425354Ld04P004F04F10R1_029.ab1   221 
  324    USDA003F_B04_BE425354Ld04P004F04F10F1_029.ab1   196 
  328  C USDA003R_B04_BE425354Ld04P004F04F10R1_029.ab1   185 
  344    USDA003F_B04_BE425354Ld04P004F04F10F1_029.ab1   216 
  352  C USDA003R_B04_BE425354Ld04P004F04F10R1_029.ab1   161 
  360    USDA003F_B04_BE425354Ld04P004F04F10F1_029.ab1   232 
  368  C USDA003R_B04_BE425354Ld04P004F04F10R1_029.ab1   145 
  416    USDA003F_B04_BE425354Ld04P004F04F10F1_029.ab1   288 
  456  C USDA003R_B04_BE425354Ld04P004F04F10R1_029.ab1    57 
  460    USDA003F_B04_BE425354Ld04P004F04F10F1_029.ab1   332 
Contig length: old 658, new 659

Contig length: old 659, new 659
New start: 0