No. words: 1048; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:395)  375  0.76 0.00 0.25  USDA003F_G04_BE425354Ld09P004F04F10F1_024.ab1        1   396 (114)  C USDA003R_G04_BE425354Ld09P004F04F10R1_024.ab1   (143)   395     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C USDA003R_G04_BE425354Ld09P004F04F10R1_024.ab1   538 
  211    USDA003F_G04_BE425354Ld09P004F04F10F1_024.ab1    68 
  215  C USDA003R_G04_BE425354Ld09P004F04F10R1_024.ab1   324 
  279    USDA003F_G04_BE425354Ld09P004F04F10F1_024.ab1   136 
  295  C USDA003R_G04_BE425354Ld09P004F04F10R1_024.ab1   244 
  339    USDA003F_G04_BE425354Ld09P004F04F10F1_024.ab1   196 
  375  C USDA003R_G04_BE425354Ld09P004F04F10R1_024.ab1   164 
  383    USDA003F_G04_BE425354Ld09P004F04F10F1_024.ab1   240 
  391  C USDA003R_G04_BE425354Ld09P004F04F10R1_024.ab1   148 
  395    USDA003F_G04_BE425354Ld09P004F04F10F1_024.ab1   252 
  411  C USDA003R_G04_BE425354Ld09P004F04F10R1_024.ab1   128 
  455    USDA003F_G04_BE425354Ld09P004F04F10F1_024.ab1   312 
Contig length: old 652, new 653

Contig length: old 653, new 653
New start: 0