No. words: 1502; after pruning: 1476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:633)  609  0.31 0.16 0.31  USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1        1   635 (127)  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   (106)   634     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   740 
  151    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1    44 
  155  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   586 
  163    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1    56 
  179  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   562 
  183    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1    76 
  211  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   530 
  215    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   108 
  263  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   478 
  267    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   160 
  283  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   458 
  287    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   180 
  311  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   430 
  315    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   208 
  323  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   418 
  327    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   220 
  359  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   382 
  371    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   264 
  532  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   209 
  540    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   433 
  588  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   153 
  592    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   485 
  616  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1   125 
  656    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   549 
  680  C USDA002R_G03_BE442716Ld01P004A02A08R1_020.ab1    61 
  692    USDA002F_G03_BE442716Ld01P004A02A08F1_020.ab1   585 
Contig length: old 868, new 869

Contig length: old 869, new 869
New start: 0