No. words: 1503; after pruning: 1477


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:628)  598  0.63 0.16 0.32  USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1        1   630 (132)  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   (112)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   741 
  148    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1    36 
  164  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   578 
  168    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1    56 
  176  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   566 
  184    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1    72 
  196  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   546 
  200    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1    88 
  235  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   507 
  243    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   131 
  291  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   451 
  295    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   183 
  489  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   252 
  493    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   381 
  587  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   154 
  591    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   479 
  599  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   142 
  607    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   495 
  615  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1   126 
  651    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   539 
  655  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1    86 
  659    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   547 
  663  C USDA002R_A04_BE442716Ld03P004A02A08R1_021.ab1    78 
  706    USDA002F_A04_BE442716Ld03P004A02A08F1_021.ab1   594 
Contig length: old 874, new 874

Contig length: old 874, new 874
New start: 0