No. words: 439; after pruning: 413


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.0 (1,1:164)  152  0.00 0.60 1.20  USDA021F_A04_BE443332Td01P043H05P004B021F1_032.ab1        1   166 (50)  C USDA021R_A04_BE443332Td01P043H05P004B021R1_032.ab1   (58)   165     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1  C USDA021R_A04_BE443332Td01P043H05P004B021R1_032.ab1   223 
  106    USDA021F_A04_BE443332Td01P043H05P004B021F1_032.ab1    47 
  118  C USDA021R_A04_BE443332Td01P043H05P004B021R1_032.ab1   106 
  154    USDA021F_A04_BE443332Td01P043H05P004B021F1_032.ab1    95 
  158  C USDA021R_A04_BE443332Td01P043H05P004B021R1_032.ab1    66 
  174    USDA021F_A04_BE443332Td01P043H05P004B021F1_032.ab1   115 
Contig length: old 274, new 275

Contig length: old 275, new 275
New start: 0