No. words: 1727; after pruning: 1701


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:1210)  486  0.19 0.00 0.00  USDA005R3_G03_BE443797Ld01P004A04A10R3_019.ab1      365   880 (0)  C USDA005F3_G03_BE443797Ld01P004A04A10F3_019.ab1   (0)   847   332 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1    USDA005R3_G03_BE443797Ld01P004A04A10R3_019.ab1     1 
  516  C USDA005F3_G03_BE443797Ld01P004A04A10F3_019.ab1   696 
  520    USDA005R3_G03_BE443797Ld01P004A04A10R3_019.ab1   520 
  528  C USDA005F3_G03_BE443797Ld01P004A04A10F3_019.ab1   684 
  532    USDA005R3_G03_BE443797Ld01P004A04A10R3_019.ab1   532 
  536  C USDA005F3_G03_BE443797Ld01P004A04A10F3_019.ab1   676 
Contig length: old 1211, new 1211

Contig length: old 1211, new 1211
New start: 0