No. words: 1615; after pruning: 1589


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.9 (1,1:1229)  350  0.52 0.52 0.26  USDA005R3_A04_BE443797Ld03P004A04A10R3_032.ab1      413   796 (1)  C USDA005F3_A04_BE443797Ld03P004A04A10F3_032.ab1   (0)   818   434 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1    USDA005R3_A04_BE443797Ld03P004A04A10R3_032.ab1     1 
  547  C USDA005F3_A04_BE443797Ld03P004A04A10F3_032.ab1   684 
  551    USDA005R3_A04_BE443797Ld03P004A04A10R3_032.ab1   551 
  563  C USDA005F3_A04_BE443797Ld03P004A04A10F3_032.ab1   668 
  567    USDA005R3_A04_BE443797Ld03P004A04A10R3_032.ab1   567 
  583  C USDA005F3_A04_BE443797Ld03P004A04A10F3_032.ab1   648 
Contig length: old 1230, new 1230

Contig length: old 1230, new 1230
New start: 0