No. words: 1502; after pruning: 1476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:725)  713  0.00 0.00 0.14  USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1        1   726 (17)  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1   (34)   725     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1   759 
   46    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1    12 
   50  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1   710 
   54    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1    20 
   98  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1   662 
  114    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1    80 
  126  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1   634 
  138    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1   104 
  162  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1   598 
  482    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1   448 
  670  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1    90 
  678    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1   644 
  686  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1    74 
  698    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1   664 
  702  C USDA026R_F04_BE444305Td06P043C03P032B011R1_022.ab1    58 
  734    USDA026F_F04_BE444305Td06P043C03P032B011F1_022.ab1   700 
Contig length: old 776, new 777

Contig length: old 777, new 777
New start: 0