No. words: 1307; after pruning: 1281


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.4 (1,1:609)  595  0.16 0.00 0.16  USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1        1   609 (34)  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   (55)   609     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   664 
   71    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1    16 
   79  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   586 
  175    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   120 
  179  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   486 
  227    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   172 
  231  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   434 
  243    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   188 
  251  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   414 
  271    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   216 
  279  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   386 
  439    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   384 
  443  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   222 
  451    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   396 
  459  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   206 
  507    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   452 
  515  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   150 
  543    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   488 
  551  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1   114 
  559    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   504 
  610  C USDA026R_G07_BE444305Td07P043D03P032B011R1_051.ab1    55 
  626    USDA026F_G07_BE444305Td07P043D03P032B011F1_051.ab1   571 
Contig length: old 697, new 698

Contig length: old 698, new 698
New start: 0