No. words: 1621; after pruning: 1595


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:873)  736  0.13 0.00 0.00  USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1       32   778 (0)  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   (0)   843    97 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1    USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1     1 
  184  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   691 
  192    USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1   192 
  248  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   627 
  252    USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1   252 
  312  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   563 
  340    USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1   340 
  344  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   531 
  400    USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1   400 
  404  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   471 
  420    USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1   420 
  424  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   451 
  428    USDA013F_A07_BE444305Tu01P032B01P032B07F1_063.ab1   428 
  436  C USDA013R_A07_BE444305Tu01P032B01P032B07R1_063.ab1   439 
Contig length: old 874, new 874

Contig length: old 874, new 874
New start: 0