No. words: 1593; after pruning: 1567


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:774)  735  0.39 0.00 0.00  USDA009_F03_BE444505At02P017E01E07F1_021.ab1        1   775 (19)  C USDA009_F09_BE444505At02P017E01E07R1_069.ab1   (24)   775     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C USDA009_F09_BE444505At02P017E01E07R1_069.ab1   799 
   28    USDA009_F03_BE444505At02P017E01E07F1_021.ab1     4 
  533  C USDA009_F09_BE444505At02P017E01E07R1_069.ab1   267 
  553    USDA009_F03_BE444505At02P017E01E07F1_021.ab1   529 
  557  C USDA009_F09_BE444505At02P017E01E07R1_069.ab1   243 
  565    USDA009_F03_BE444505At02P017E01E07F1_021.ab1   541 
  569  C USDA009_F09_BE444505At02P017E01E07R1_069.ab1   231 
  593    USDA009_F03_BE444505At02P017E01E07F1_021.ab1   569 
  605  C USDA009_F09_BE444505At02P017E01E07R1_069.ab1   195 
  789    USDA009_F03_BE444505At02P017E01E07F1_021.ab1   765 
Contig length: old 818, new 818

Contig length: old 818, new 818
New start: 0 
S Change at: 63; seg lengths: entry 4, contig 4
S Change at: 105; seg lengths: entry 1, contig 1