No. words: 1753; after pruning: 1727


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:959)  705  1.15 0.38 0.26  USDA012F_E05_BE445121At01P004E05P004E11F1_039.ab1        1   781 (0)  C USDA012R_E05_BE445121At01P004E05P004E11R1_039.ab1   (12)   960   179 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C USDA012R_E05_BE445121At01P004E05P004E11R1_039.ab1   972 
   20    USDA012F_E05_BE445121At01P004E05P004E11F1_039.ab1     8 
  354  C USDA012R_E05_BE445121At01P004E05P004E11R1_039.ab1   618 
  382    USDA012F_E05_BE445121At01P004E05P004E11F1_039.ab1   370 
  398  C USDA012R_E05_BE445121At01P004E05P004E11R1_039.ab1   574 
  414    USDA012F_E05_BE445121At01P004E05P004E11F1_039.ab1   402 
  454  C USDA012R_E05_BE445121At01P004E05P004E11R1_039.ab1   518 
  474    USDA012F_E05_BE445121At01P004E05P004E11F1_039.ab1   462 
  478  C USDA012R_E05_BE445121At01P004E05P004E11R1_039.ab1   494 
Contig length: old 972, new 971

Contig length: old 971, new 972
New start: 0 
S Change at: 16; seg lengths: entry 1, contig 1
I Change at: 33; seg lengths: entry 1, contig 0