No. words: 1793; after pruning: 1753


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.2 (1,1:973)  786  0.37 0.00 0.00  USDA012F_F05_BE445121At02P004E05P004E11F1_037.ab1       22   840 (0)  C USDA012R_F05_BE445121At02P004E05P004E11R1_037.ab1   (0)   953   135 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    USDA012F_F05_BE445121At02P004E05P004E11F1_037.ab1     1 
  447  C USDA012R_F05_BE445121At02P004E05P004E11R1_037.ab1   528 
  559    USDA012F_F05_BE445121At02P004E05P004E11F1_037.ab1   559 
  579  C USDA012R_F05_BE445121At02P004E05P004E11R1_037.ab1   396 
Contig length: old 974, new 974

Contig length: old 974, new 974
New start: 0