No. words: 1715; after pruning: 1689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:958)  739  0.00 0.00 0.00  USDA012F_F06_BE445121Ld08P004E05P004E11F1_038.ab1       97   852 (0)  C USDA012R_F06_BE445121Ld08P004E05P004E11R1_038.ab1   (0)   863   108 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1    USDA012F_F06_BE445121Ld08P004E05P004E11F1_038.ab1     1 
  380  C USDA012R_F06_BE445121Ld08P004E05P004E11R1_038.ab1   580 
Contig length: old 959, new 959

Contig length: old 959, new 959
New start: 0