No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:574)  540  0.00 0.35 0.17  USDA012F_B03_BE445475Tu02P004B06P004B12F1_029.ab1        1   575 (40)  C USDA012R_B03_BE445475Tu02P004B06P004B12R1_029.ab1   (38)   576     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA012R_B03_BE445475Tu02P004B06P004B12R1_029.ab1   614 
  480    USDA012F_B03_BE445475Tu02P004B06P004B12F1_029.ab1   440 
Contig length: old 654, new 655

Contig length: old 655, new 655
New start: 0